Hello,
Sorry for the late reply, I will fix the package this week.
I will also need to do a major change in the code since GDC legacy will be
shut down in the next months.
Best regards,
Tiago Chedraoui Silva
On Fri, Apr 28, 2023 at 10:04 AM Dario Strbenac via Bioc-devel <
bioc-devel@r-project.o
Good day,
The package has checking errors which the developers of it need to fix
themselves.
Quitting from lines 114-121 (subtypes.Rmd)
Error: processing vignette 'subtypes.Rmd' failed with diagnostics:
object 'lgg.gbm.subtype' not found
The installation error simply indicates that the package
The problem is that it is in an error state
--- re-building ‘subtypes.Rmd’ using rmarkdown
Quitting from lines 114-121 (subtypes.Rmd)
Error: processing vignette 'subtypes.Rmd' failed with diagnostics:
object 'lgg.gbm.subtype' not found
--- failed re-building ‘subtypes.Rmd’
so the standard install
Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: Bioc-devel on behalf of Elizabeth
Cattaneo
Sent: Thursday, April 27, 2023 1:25 PM
To: bioc-devel@r-project.org ;
bioc-devel-requ...@r-project.org
Subject: [Bi
Hello!
I was trying to use TCGAbiolinks as usual in a R-Colab notebook but I got
this error:
Bioconductor version 3.17 (BiocManager 1.30.20), R 4.3.0 (2023-04-21)
Installing package(s) 'TCGAbiolinks' Warning message: *“package
‘TCGAbiolinks’ is not available for *
*Bioconductor version '3.17'*
Wh
