rk 14263
From: Henrik Bengtsson
Sent: Wednesday, April 7, 2021 3:13 PM
To: Aaron Lun
Cc: Kern, Lori ; bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Updates to BiocFileCache, AnnotationHub, and
ExperimentHub
FWIW, I ran into a similar problem when I moved R.cach
y scRNAseq and celldex don't work anymore. It'll be like our
> AWS-China problems multiplied by 10.
>
> Why not just make a new cache and populate it? Well, I don't really
> care what you do, as long as I don't get an error.
>
> -A
>
> > _
che and populate it? Well, I don't really
care what you do, as long as I don't get an error.
-A
>
> From: Aaron Lun
> Sent: Wednesday, April 7, 2021 11:41 AM
> To: Kern, Lori
> Cc: bioc-devel@r-project.org
> Subject: Re: [Bioc-devel] Upd
r using environment variables; only in
>> the case of BiocFileCache() . Most package specific caches created their
>> own cache in the constructor so it should not cause the ERROR in that case.
>>
>>
>> Lori Shepherd
>>
>> Bioconductor Core Team
>>
>&
>
>
> Lori Shepherd
>
> Bioconductor Core Team
>
> Roswell Park Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
> ____________
> From: Aaron Lun
rk 14263
From: Aaron Lun
Sent: Wednesday, April 7, 2021 11:41 AM
To: Kern, Lori
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Updates to BiocFileCache, AnnotationHub, and
ExperimentHub
Woah, I missed the part where you said that there would be an error.
This
ark Comprehensive Cancer Center
>
> Department of Biostatistics & Bioinformatics
>
> Elm & Carlton Streets
>
> Buffalo, New York 14263
>
>
> From: Bioc-devel on behalf of Aaron Lun
>
> Sent: Wednesday, April 7, 2021 4:
n
Sent: Wednesday, April 7, 2021 4:10 AM
To: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] Updates to BiocFileCache, AnnotationHub, and
ExperimentHub
rebook and basilisk are also currently using rappdirs. I would be
interested in the motivation behind the switch for the Hubs and whether
that is ap
rebook and basilisk are also currently using rappdirs. I would be
interested in the motivation behind the switch for the Hubs and whether
that is applicable to those two packages as well.
-A
On 4/5/21 6:41 AM, Kern, Lori wrote:
We are in process of making some major updates to the caching in
We are in process of making some major updates to the caching in BiocFileCache,
AnnotationHub, and ExperimentHub. Namely, the default caching location will
change from using rappdirs::user_cache_dir to using tools::R_user_dir
eventually relieving the dependency on rappdirs. To avoid confli
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