Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-20 Thread Martin Morgan
have tried that last night, but it was late ... Thanks Gordon -Original Message- From: Martin Morgan [mailto:martin.mor...@roswellpark.org] Sent: Tuesday, 11 April 2017 7:20 PM To: Gordon K Smyth <sm...@wehi.edu.au>; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Using

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-20 Thread Michael Stadler
Michael >> >> >> >> On 17.04.2017 02:08, Hervé Pagès wrote: >>> FWIW here are all the packages that are victim of this >>> installed.packages bug in today's build report: >>> >>> alpine >>> fCI >>> GenomicFeatures >>&

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Hervé Pagès
: Tuesday, 11 April 2017 7:20 PM To: Gordon K Smyth <sm...@wehi.edu.au>; bioc-devel@r-project.org Subject: Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta s

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Hervé Pagès
Hi Michael, On 04/17/2017 12:31 PM, Michael Love wrote: alpine, which had this error as of Sunday, is now cleared (I didn't make any changes to the code)

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Michael Stadler
>> >> >> >> On 17.04.2017 02:08, Hervé Pagès wrote: >>> FWIW here are all the packages that are victim of this >>> installed.packages bug in today's build report: >>> >>> alpine >>> fCI >>> GenomicFeatures

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-19 Thread Michael Stadler
Original Message- >>> From: Martin Morgan [mailto:martin.mor...@roswellpark.org] >>> Sent: Tuesday, 11 April 2017 7:20 PM >>> To: Gordon K Smyth <sm...@wehi.edu.au>; bioc-devel@r-project.org >>> Subject: Re: [Bioc-devel] Using BiocInstaller with

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-17 Thread Michael Love
alpine, which had this error as of Sunday, is now cleared (I didn't make any changes to the code) http://master.bioconductor.org/checkResults/devel/bioc-LATEST/alpine/ ___ Bioc-devel@r-project.org mailing list

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-16 Thread Hervé Pagès
[Bioc-devel] Using BiocInstaller with R 3.4.0 beta On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error m

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Martin Morgan
On 04/11/2017 05:01 AM, Gordon K Smyth wrote: The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error message: installed.packages() Error in if

Re: [Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Gordon K Smyth
The problem appears to be with installed.packages(). If I start a fresh R 3.4.0beta session, then I can run installed.packages() once with correct results, but running it a second time gives the error message: > installed.packages() Error in if (file.exists(dest) && file.mtime(dest) >

[Bioc-devel] Using BiocInstaller with R 3.4.0 beta

2017-04-11 Thread Gordon K Smyth
I thought I would test out R 3.4.0 beta (for Windows) but now I can't use the BiocInstaller package. Attempts to use biocLite() or biocValid() lead to an error message as shown below. What have I overlooked? Thanks Gordon > sessionInfo() R version 3.4.0 beta (2017-04-08 r72499) Platform: