I think there are fairly clear use cases for a VcfFile class. It's nice to
be able to dispatch on the file/path, for example in visualization tools.
Please add this when you have a chance.
Thanks,
Michael
On Wed, Jul 17, 2013 at 9:56 AM, Valerie Obenchain voben...@fhcrc.orgwrote:
Hi Robert,
hi Valerie,
sounds great, and i think it will do, however, i've encountered a
problem when trying to obtain the tabix index file, required to build
this TabixFile object, with a toy VCF file i'm playing with:
library(Rsamtools)
indexTabix(x.vcf.gz)
Error in value[[3L]](cond) : 'seq' must be
