Re: [Bioc-devel] Warning when Reading Example VCF

2016-09-27 Thread Obenchain, Valerie
Hi Dario, On 09/27/2016 01:00 AM, Dario Strbenac wrote: > Good day, > > When importing a VCF file from VariantAnnotation's data directory into R, a > warning is emitted. > > library(VariantAnnotation) > aFile <- system.file("extdata", "hapmap_exome_chr22.vcf.gz", package = > "VariantAnnotation")

[Bioc-devel] Warning when Reading Example VCF

2016-09-27 Thread Dario Strbenac
Good day, When importing a VCF file from VariantAnnotation's data directory into R, a warning is emitted. library(VariantAnnotation) aFile <- system.file("extdata", "hapmap_exome_chr22.vcf.gz", package = "VariantAnnotation") aSet <- readVcf(aFile, "hg19") Warning message: In .bcfHeaderAsSimple