hi,
got it, the current version on svn of VariantAnnotation (1.21.19) is
ahead of what's available via biocLite(). i've checked out
VariantAnnotation 1.21.19, installed it and the bug has dissapeared.
problem solved.
thanks!
robert.
On 04/19/2017 05:39 PM, Michael Lawrence wrote:
Not
Not reproducing for me. This is with S4Vectors, VariantAnnotation,
etc, from svn.
R Under development (unstable) (2016-12-13 r71785)
Platform: x86_64-pc-linux-gnu (64-bit)
Running under: Arch Linux
locale:
[1] LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C
[3] LC_TIME=en_US.UTF-8
hi,
it seems that recent changes to S4Vectors are breaking the coercion from
the '*VCF' class to the 'VRanges' class. the traceback points to the
private function 'recycleVector() from the 'S4Vectors' package, please
find below the minimal example that reproduces the problem with the
session
