Re: [Bioc-devel] best practice: verbose messages

2013-07-11 Thread Kasper Daniel Hansen
On Thu, Jul 11, 2013 at 9:57 AM, Henrik Bengtsson h...@biostat.ucsf.eduwrote: On Wed, Jul 10, 2013 at 9:10 PM, Hervé Pagès hpa...@fhcrc.org wrote: Hi Kasper, On 07/10/2013 10:50 AM, Kasper Daniel Hansen wrote: On Wed, Jul 10, 2013 at 12:38 PM, Dan Tenenbaum dtene...@fhcrc.org

Re: [Bioc-devel] best practice: verbose messages

2013-07-11 Thread Sean Davis
On Thu, Jul 11, 2013 at 11:01 AM, Kasper Daniel Hansen kasperdanielhan...@gmail.com wrote: On Thu, Jul 11, 2013 at 9:57 AM, Henrik Bengtsson h...@biostat.ucsf.eduwrote: On Wed, Jul 10, 2013 at 9:10 PM, Hervé Pagès hpa...@fhcrc.org wrote: Hi Kasper, On 07/10/2013 10:50 AM, Kasper

[Bioc-devel] best practice: verbose messages

2013-07-10 Thread Kasper Daniel Hansen
Should I use cat() or message() (or something else) for if(verbose) cat(my message\n) Best, Kasper [[alternative HTML version deleted]] ___ Bioc-devel@r-project.org mailing list https://stat.ethz.ch/mailman/listinfo/bioc-devel

Re: [Bioc-devel] best practice: verbose messages

2013-07-10 Thread Michael Lawrence
If it's an informational message, like one you might log, use message(). If you're rendering an object as text, like in a show method, use cat(). Just my opinion, Michael On Wed, Jul 10, 2013 at 8:24 AM, Kasper Daniel Hansen kasperdanielhan...@gmail.com wrote: Should I use cat() or message()

Re: [Bioc-devel] best practice: verbose messages

2013-07-10 Thread Dan Tenenbaum
On Wed, Jul 10, 2013 at 9:17 AM, Michael Lawrence lawrence.mich...@gene.com wrote: If it's an informational message, like one you might log, use message(). If you're rendering an object as text, like in a show method, use cat(). Another thing to consider is that messages can be suppressed with

Re: [Bioc-devel] best practice: verbose messages

2013-07-10 Thread Dan Tenenbaum
On Wed, Jul 10, 2013 at 10:50 AM, Kasper Daniel Hansen kasperdanielhan...@gmail.com wrote: On Wed, Jul 10, 2013 at 12:38 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Wed, Jul 10, 2013 at 9:17 AM, Michael Lawrence lawrence.mich...@gene.com wrote: If it's an informational message, like one

Re: [Bioc-devel] best practice: verbose messages

2013-07-10 Thread Hervé Pagès
Hi Kasper, On 07/10/2013 10:50 AM, Kasper Daniel Hansen wrote: On Wed, Jul 10, 2013 at 12:38 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: On Wed, Jul 10, 2013 at 9:17 AM, Michael Lawrence lawrence.mich...@gene.com wrote: If it's an informational message, like one you might log, use message().