Re: [Bioc-devel] conflict rowRanges SummarizedExperiment/matrixStats

Thanks for the explanation and the proposed solution. I was not aware the DelayedArray package was involved as well. Maarten On Fri, Apr 7, 2017 at 6:26 AM, Hervé Pagès wrote: > Hi Maarten, Vince, > > We need to fix this. The plan is to promote rowRanges to an S4 generic >

Re: [Bioc-devel] conflict rowRanges SummarizedExperiment/matrixStats

Hi Maarten, Vince, We need to fix this. The plan is to promote rowRanges to an S4 generic in the DelayedArray package (DelayedArray depends on matrixStats). And to remove the rowRanges S4 generic defined in SummarizedExperiment (SummarizedExperiment depends on DelayedArray). So we'll have only 1

Re: [Bioc-devel] conflict rowRanges SummarizedExperiment/matrixStats

I am sure there are better responses to come, but here are a few initial comments. On Thu, Apr 6, 2017 at 5:42 AM, Maarten van Iterson wrote: > Dear all, > > SummarizedExperiment and matrixStats both contain a method/function called > rowRanges one operates on a

[Bioc-devel] conflict rowRanges SummarizedExperiment/matrixStats

Dear all, SummarizedExperiment and matrixStats both contain a method/function called rowRanges one operates on a SummarizedExperiment-object the other on a matrix. matrixStats is required by SummarizedExperiment, or a package it is depending on, so rowRanges is masked when loading