Re: [Bioc-devel] making txdb, and propagating metadata from AnnotationHub to GenomicFeatures

2015-06-18 Thread Sonali Arora
Hi Michael, Herve, On 6/17/2015 9:43 PM, Hervé Pagès wrote: Hi Michael, On 06/17/2015 12:35 AM, Michael Love wrote: Background: With previous approaches that I would recommend to users for building txdb along the way of making count tables, it was desirable that the GTF release information

Re: [Bioc-devel] making txdb, and propagating metadata from AnnotationHub to GenomicFeatures

2015-06-18 Thread Michael Love
that's great Hervé and Sonali! thanks for the quick response. best, m On Thu, Jun 18, 2015 at 10:07 AM, Sonali Arora sar...@fredhutch.org wrote: Hi Michael, Herve, On 6/17/2015 9:43 PM, Hervé Pagès wrote: Hi Michael, On 06/17/2015 12:35 AM, Michael Love wrote: Background: With

Re: [Bioc-devel] making txdb, and propagating metadata from AnnotationHub to GenomicFeatures

2015-06-17 Thread Hervé Pagès
Hi Michael, On 06/17/2015 12:35 AM, Michael Love wrote: Background: With previous approaches that I would recommend to users for building txdb along the way of making count tables, it was desirable that the GTF release information would *automatically* be passed into the metadata of the

[Bioc-devel] making txdb, and propagating metadata from AnnotationHub to GenomicFeatures

2015-06-17 Thread Michael Love
Background: With previous approaches that I would recommend to users for building txdb along the way of making count tables, it was desirable that the GTF release information would *automatically* be passed into the metadata of the rowRanges of the SummarizedExperiment. for example, in