Re: [Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

2017-04-17 Thread Ulrich Bodenhofer
Thanks for this great solution, Hervé! Though it is finally very simple, I would never have figured it out by myself. I already updated the code in that way and checked it in (after having performed a check). I hope that everything works as soon as the changes have propagated into the build

Re: [Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

2017-04-16 Thread Hervé Pagès
Hi David, Yes, definitely related to this thread. FWIW the msa compilation problem on veracruz2 seems to be caused by some recent changes to the clang compiler. Following the CRAN folks lead, we use clang 4 on veracruz2, which is a more recent version than the one shipped with Xcode. It's

Re: [Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

2017-04-16 Thread Coffey, David G
Hello, My Bioconductor Package ‘LymphoSeq’ received the following build error on veracruz2: ERROR: dependency ‘msa’ is not available for package ‘LymphoSeq’ Indeed, ‘msa’ is one of my package dependencies.

[Bioc-devel] package 'msa' not building on veracruz2, but on toluca2 and other Mac OS systems

2017-04-07 Thread Ulrich Bodenhofer
Hi, The devel version of our package 'msa' currently does not compile on veracruz2 (R 3.4.0 alpha under OS X 10.11.6 El Capitan), but it seems to work on toluca2 (R-devel on OS X 10.9.5 Mavericks). I also checked on my Mac at home (R 3.3.3 under macOS 10.12.3 Sierra using the very latest