Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-25 Thread Aaron Lun
On 24/05/16 18:42, Dan Tenenbaum wrote: - Original Message - From: "Dan Tenenbaum" <dtene...@fredhutch.org> To: "Aaron Lun" <a...@wehi.edu.au> Cc: "bioc-devel" <bioc-devel@r-project.org> Sent: Tuesday, May 24, 2016 9:38:01 AM Subject: Re:

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-25 Thread Dan Tenenbaum
- Original Message - > From: "Aaron Lun" <a...@wehi.edu.au> > To: "Dan Tenenbaum" <dtene...@fredhutch.org> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Tuesday, May 24, 2016 11:04:59 AM > Subject: Re: [Bioc-de

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Jason Serviss
: - Original Message - From: "Jason Serviss" <jason.serv...@ki.se<mailto:jason.serv...@ki.se>> To: "Aaron Lun" <a...@wehi.edu.au<mailto:a...@wehi.edu.au>> Cc: "bioc-devel" <bioc-devel@r-project.org<mailto:bioc-devel@r-project.org>

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Dan Tenenbaum
- Original Message - > From: "Dan Tenenbaum" <dtene...@fredhutch.org> > To: "Aaron Lun" <a...@wehi.edu.au> > Cc: "bioc-devel" <bioc-devel@r-project.org> > Sent: Tuesday, May 24, 2016 9:38:01 AM > Subject: Re: [Bioc-devel] p

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Dan Tenenbaum
- Original Message - > From: "Aaron Lun" <a...@wehi.edu.au> > To: "bioc-devel" <bioc-devel@r-project.org> > Sent: Tuesday, May 24, 2016 8:06:13 AM > Subject: Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX > Dear Martin and List

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Jason Serviss
I can confirm that I am experiencing similar problems on OSX with several other packages at the moment (openssl and git2r), I know that Xcode just updated and am not sure if this is causing some of the problems (potentially some update with their command line tools?)...

Re: [Bioc-devel] problems linking to Rhtslib on Mac OSX

2016-05-24 Thread Aaron Lun
Dear Martin and List, I have a problem with linking to Rhtslib on Mac OSX when my R installation directory differs from the package installation directory. Trying to load csaw (Bioc release version) gives me: > require(csaw) # ... whole lot of dependencies... Loading required package: csaw