FYI - I can reproduce this on linux with R Under development (unstable)
(2020-03-19 r78011)
From: Bioc-devel on behalf of Vincent Carey
Sent: 16 March 2020 23:52
To: bioc-devel
Subject: [Bioc-devel] proper way to define an S4 method for 'plot'
I just
Not sure if its worth mentioning but I saw this type of ERROR when we first
started the release in R 4.0.0 when S3 plot functions were not defined in the
NAMESPACE.
http://bioconductor.org/developers/how-to/troubleshoot-build-report/#s3method
But it could also be from plot() generic moving
We'll discuss this and other issues at the developer forum on Thursday (12pm US
Eastern) https://stat.ethz.ch/pipermail/bioc-devel/2020-March/016347.html.
The builds are a really big mess at the moment
http://bioconductor.org/checkResults/3.11/bioc-LATEST/, with many changes in
R-devel causing
At least with 2020-03-16 r77987 (Mac OS) I wasn't able to reproduce this.
Btw, there's no real need for an S4 method in this case. An S3 method would
work just as well.
On Mon, Mar 16, 2020 at 4:12 PM Henrik Bengtsson
wrote:
> Maybe it's related to:
>
> * The plot() S3 generic function is now
Maybe it's related to:
* The plot() S3 generic function is now in package base rather than
package graphics, as it is reasonable to have methods that do not use
the graphics package. The generic is currently re-exported from the
graphics namespace to allow packages importing it from there to
I just updated my R and I am getting into trouble with MLInterfaces
maintenance.
> BiocManager::install("MLInterfaces")
*Bioconductor version 3.11 (BiocManager 1.30.10), R Under development
(unstable)*
* (2020-03-15 r77975)*
*Installing package(s) 'MLInterfaces'*
*Warning: unable to access
