require is expensive and detach() fraught with subtle difficulties. Using
withCallingHandlers is more elegant than capture.output(). See and direct
further commentary to the issue.
Martin
On 1/22/19, 4:41 AM, "Bioc-devel on behalf of Levi Waldron"
wrote:
BTW I just noticed the
BTW I just noticed the alternative approach of searching through the
warnings, used at
https://github.com/Bioconductor/bioc_docker/blob/5be6d37ded4f97995640cbb3a7d201165234b1e4/src/core/install.R.in#L42
:
if (!is.null(warnings()))
{
w <- capture.output(warnings())
if (length(grep("is not
I opened an issue on BiocManager (
https://github.com/Bioconductor/BiocManager/issues/39) somewhat related to
Sean's recent post, about what BiocManager::install() should return, and it
occurs to me that I should mention it here too for feedback:
> Having `BiocManager::install()` return the
