Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Hi Hervé, On Sat, 15-04-2017, at 05:36:35, Hervé Pagès wrote: > Hi Ramon, > > Good news: looks like a Cairo binary for R 3.4 showed up on CRAN > yesterday: > >https://cran.r-project.org/bin/macosx/el-capitan/contrib/3.4/ > > I installed it on veracruz2, and, according

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Hi Ramon, Good news: looks like a Cairo binary for R 3.4 showed up on CRAN yesterday: https://cran.r-project.org/bin/macosx/el-capitan/contrib/3.4/ I installed it on veracruz2, and, according to the logs of the current builds, ADaCGH2 built and checked successfully on this machine :-) If

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Dear Martin, On Fri, 07-04-2017, at 12:55:55, Martin Morgan wrote: > On 04/07/2017 03:55 AM, Ramon Diaz-Uriarte wrote: >> >> Dear Martin and Valerie, >> >> >> I am not sure how to proceed here since the 14th is approaching and I still >> see this error (in both

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

On 04/07/2017 03:55 AM, Ramon Diaz-Uriarte wrote: Dear Martin and Valerie, I am not sure how to proceed here since the 14th is approaching and I still see this error (in both my package and at least one other package ---arrayQualityMetrics). I could comment out the plotting code for the

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Dear Hervé, Thanks for your answer. I'll ignore those segfaults then. Best, R. On Fri, 07-04-2017, at 08:36:40, Hervé Pagès wrote: > Hi Ramon, > > It doesn't seem that this segfault occurs in ADaCGH2 so you can > ignore it. I can't be 100% sure but I actually expect it

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Hi Ramon, It doesn't seem that this segfault occurs in ADaCGH2 so you can ignore it. I can't be 100% sure but I actually expect it to go away when things are sorted out with the new El Capitan binaries. Unfortunately it's not something we fully control so let's wait and see... Cheers, H. On

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Dear Martin and Valerie, I am not sure how to proceed here since the 14th is approaching and I still see this error (in both my package and at least one other package ---arrayQualityMetrics). I could comment out the plotting code for the vignette and examples when running on El Capitan. Is

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Dear Martin, Thanks a lot for looking into this. I'll wait then. Best, R. On Mon, 03-04-2017, at 18:34, Martin Morgan wrote: > On 03/31/2017 04:19 AM, Ramon Diaz-Uriarte wrote: >> >> Dear All, >> >> A package I maintain, ADaCGH2, is failing to build in

Re: [Bioc-devel] segfault when building in veracruz2 for BioC 3.5

On 03/31/2017 04:19 AM, Ramon Diaz-Uriarte wrote: Dear All, A package I maintain, ADaCGH2, is failing to build in veracruz2 with a segfault that seems to happen when plotting (in a call to plotting that happens inside a mclapply)

[Bioc-devel] segfault when building in veracruz2 for BioC 3.5

Dear All, A package I maintain, ADaCGH2, is failing to build in veracruz2 with a segfault that seems to happen when plotting (in a call to plotting that happens inside a mclapply) http://bioconductor.org/checkResults/devel/bioc-LATEST/ADaCGH2/veracruz2-buildsrc.html these are some of the