Thank you all for the efforts on this! I agree with Mike that there's a
lot of yet untapped potential in the workflows, for all levels of BioC
users: for beginners, to make their first steps, for more experienced
users, to learn new stuff.
Mike's points 1-5 are great, I second them.
And then
2017 10:27:55 AM
To: Aaron Lun
Cc: bioc-devel@r-project.org
Subject: Re: [Bioc-devel] workflow page reorganization
Hi Aaron,
thank you for taking the lead. I've merged your suggested categories with
my preliminary arrangement (which just went online). I've also included an
index at th
This already looks much improved, thanks Andrzej and Aaron. I think
workflows are where it's at, and this page is probably
underappreciated by Bioconductor users and the outside community.
My wishlist for the workflows page, which may exceed what is available
for the current effort:
1) It should
Thanks Andrzej. And yes, I just put in a PR; I hope itemized sublists
for a particular workflow (i.e., mine) aren't too ambitious.
I'm thinking about whether "Epigenetics" is the right section heading.
For greatest generality, you could call it "Genome regulation", which
bundles all genomic bin
Hi Aaron,
thank you for taking the lead. I've merged your suggested categories with
my preliminary arrangement (which just went online). I've also included an
index at the beginning of the page.
Any refinements are of course welcome, e.g. via PR to
https://github.com/Bioconductor/bioconductor.org
Hi Laurent,
thanks, we might consider this in the future. To get us going, for the
moment we will probably just rearrange the website manually.
On the technical note: even though workflows are now fully fledged
packages, two documents linked from https://bioconductor.org/help/workflows
are just s
Hi,
Motivated by discussions with Aaron I've already started to group the
workflows on the page (but this change didn't propagate to the website
yet). Some common topics I was able to identify so far include:
- Beginner's Worklows authored originally by the core team giving a quite
broad overview
My proposed categories reflect my vested interests, but here goes:
- Gene expression:
- rnaseqGene
- RNAseq123
- ExpressionNormalizationWorkflow
- RnaSeqGeneEdgeRQL
- Epigenomics: (not quite sure what to call this)
- chipseqDB
- methylationArrayAnalysis
- generegulatio
On 15 December 2017 12:33, Shepherd, Lori wrote:
> Hello all,
>
>
> There has been a request to reorganize the workflow page as workflows
> have grown past basic and advanced.
>
> http://bioconductor.org/help/workflows/
>
> We wanted to check with the community what your thoughts were for
> categ
Hello all,
There has been a request to reorganize the workflow page as workflows have
grown past basic and advanced.
http://bioconductor.org/help/workflows/
We wanted to check with the community what your thoughts were for categories.
Thank you for your suggestions.
Lori Shepherd
Biocon
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