Re: [Bioc-devel] EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments.

2019-09-04 Thread Pages, Herve
Hi Marcel, Charles, Looks like S4Vectors:::coerceToSimpleList() is being to zealous here. I've tweaked the function a little (in S4Vectors 0.23.21) so that elements in the supplied list get coerced only when the 2nd argument (element.type) is specified. This fixes both Marcel's and Charles'

Re: [Bioc-devel] EXTERNAL: MultiAssayExperiment silently converting RangedSummarizedExperiments into SummarizedExperiments.

2019-09-03 Thread Marcel Ramos
Hi Charles, Thank you for your post and for providing a reproducible example. I was able to reduce the example to behavior from the coerce method on `list`/`ANY` objects to `SimpleList`. Here is the reduced example: ``` r suppressPackageStartupMessages({     library(SummarizedExperiment) })