Re: [Bioc-devel] IPI numbers in annotation packages

Hi Marc, That script has this in it: ## For now just get data for the ones that we have traditionally supported ## I don't even know if the other species are available... speciesList = c("chipsrc_human.sqlite", "chipsrc_rat.sqlite", "chipsrc_chicken.sqlite", "chipsrc_zebrafish.sqlite", #

Re: [Bioc-devel] IPI numbers in annotation packages

You need to scroll down that script a ways... Look for 'yeast'. On Mon, Oct 5, 2015 at 6:11 AM, James W. MacDonald wrote: > Hi Marc, > > That script has this in it: > > ## For now just get data for the ones that we have traditionally supported > ## I don't even know if the

Re: [Bioc-devel] IPI numbers in annotation packages

Ah. That's the problem. The script in getdb.sh has R --slave < /home/ubuntu/cpb_anno/AnnotationBuildPipeline/annosrc/uniprot/script/ uniprot.ws/inst/script/processDataForBuild.R which is a modification of what is in svn (to match the directory structure of the AMI), which calls on a script in a