Hi Michael,
Thanks for the report. I'll look into this.
H.
On 04/22/2014 08:29 AM, Michael Stadler wrote:
Dear Herve,
We are hitting a 'memory not mapped' problem when using trimLRpatterns
as detailed below. I did not manage to reproduce it with few sequences,
so I have to refer to a
Hi,
See the latest software builds for BioC 2.13:
http://bioconductor.org/checkResults/2.13/bioc-20140405/
The number of packages that needed to be installed on the build
system in order to build and check the 750 BioC software packages
is displayed in the right-most column of the top table:
Hi all,
I noticed that the seqinfo works on BamFile objects, but not on
BamFileList objects. For BamFileList, it does not throw an error, but
rather uses the inherited method for List, which does not return a
useful result for BamFileList. I suggest the following implementation of
a useful
Hi Ryan --
I implemented your suggestion in Rsamtools 1.17.8; it's a little weird to come
up with such a synthetic Seqinfo, but I think the usual use case will be that
the bam files are actually identical with respect to their seqinfo. And it's
better than the previous behavior.
Thanks for
