Re: [Bioc-devel] New(ish!) Seattle Bioconductor team member

2015-03-11 Thread Steve Lianoglou
Aha! On Fri, Mar 6, 2015 at 4:16 PM, Leonardo Collado Torres lcoll...@jhu.edu wrote: Welcome Jim! I'm a fan of your knitrBootstrap I knew I recognized the name from somewhere, but wasn't able to recall until now. Welcome to Bioc! -steve -- Steve Lianoglou Computational Biologist Genentech

Re: [Bioc-devel] Strange warning message on build server moscato2

2015-03-11 Thread Dan Tenenbaum
Hi, - Original Message - From: Rainer Johannes johannes.rai...@eurac.edu To: bioc-devel@r-project.org Sent: Wednesday, March 11, 2015 1:06:15 PM Subject: [Bioc-devel] Strange warning message on build server moscato2 dear all! I have submitted a new package that builds nicely on

[Bioc-devel] Strange warning message on build server moscato2

2015-03-11 Thread Rainer Johannes
dear all! I have submitted a new package that builds nicely on all machines except the windows server moscato2. I get a strange warning message, that I do not quire understand: Warning: multiple methods tables found for 'score'. I have no function or method score defined in my package. Any

Re: [Bioc-devel] requirement for named assays in SummarizedExperiment

2015-03-11 Thread Valerie Obenchain
Hi, After talking with others the vote was against enforcing names on assays() and for positional matching if all names are NULL. A mixture of names and NULL throws an error. example(SummarizedExperiment) ## all named se2 = se1 assays(cbind(se1, se2)) List of length 1 names(1): counts ##