Hi Gabe,
On 11/18/2015 09:50 AM, Gabe Becker wrote:
Hi all,
Unless I'm missing something, there is no archive of prior source packages
for Bioconductor, in the vein of CRAN's Web Archive. It has generally been
accepted, I think, that if you need a version of a package - e.g., for
precise
Developers,
On 11/16/2015 11:39 PM, Hervé Pagès wrote:
Hi Aaron,
On 11/16/2015 09:39 AM, Hervé Pagès wrote:
[...]
Anyway, you convinced me that we should not try to follow too closely
the names model for how we treat metadata columns. If nobody objects,
I'll change the behavior of the
Hi all,
Unless I'm missing something, there is no archive of prior source packages
for Bioconductor, in the vein of CRAN's Web Archive. It has generally been
accepted, I think, that if you need a version of a package - e.g., for
precise reproducibility - you can go to the still-existing release
Hi,
I am experiencing troubles installing "Hmisc", especially its dependency
"acepack", via
> biocLite("acepack")
in R-devel installed from the "R-devel-mavericks-signed.pkg" downloaded
from https://r.research.att.com/.
The error reads:
BioC_mirror: https://bioconductor.org
Using
While I am following Jo's suggestions on installing gcc via homebrew on my
mac laptop (is it normal that the "make bootstrap" command takes >20 min
already?), I am in parallel trying to make R/Bioc-devel working on our
institutional linux machines.
I was able to configure/make R-devel here,
The suggestion on R-SIG-mac in the thread I cited is that homebrew is not the
right way to go. This is from very established members of the R-community
(Simon Urbanek, Brian Ripley), and I would not treat it lightly.
Also, if you are installing R-devel (implied by use of Bioc 3.3), there are
For your Linux problem:
You might have build R differently from what you had in the past, e.g.
static vs dynamic.
Try to explicitly re-install those failed dependences and see if you any
further. If so, you might wanna remove all your installed packages and
start over with a fresh package
Could be that gcc via homebrew takes a while… especially if it is compiling
that stuff from source…
> On 18 Nov 2015, at 14:46, Ludwig Geistlinger
> wrote:
>
> While I am following Jo's suggestions on installing gcc via homebrew on my
> mac laptop (is it