[Bioc-devel] Error in DESeq Installation

Dear All, I am getting error in DESeq installation in R. package ‘DESeq’ is not available (for R version 3.3.1) > source("http://www.Bioconductor.org/biocLite.R ") Bioconductor version 3.4 (BiocInstaller 1.24.0), ?biocLite for help > biocLite("BiocUpgrade")

Re: [Bioc-devel] odd svn event

Hi Vince, probably because of spaces in the file name, see e.g. https://bugs.launchpad.net/ubuntu/+source/apache2/+bug/1284641 I had once a similar problem with BioC svn, solved it by deleting the affected directory locally and updating. HTH, Andrzej On Sun, Oct 23, 2016 at 11:27 PM, Vincent C

[Bioc-devel] SummarizedExperiment

Hi, I am developing a package based on the SummarizedExperiment package. I have included the SummarizedExperiment package in both DESCRIPTION and NAMESPACE files. In some functions of my package, and also in the vignette, I use the function "assays()" from the SummarizedExperiment package. How

Re: [Bioc-devel] SummarizedExperiment

On 10/24/2016 07:48 AM, Rodriguez Martinez, Andrea wrote: Hi, I am developing a package based on the SummarizedExperiment package. I have included the SummarizedExperiment package in both DESCRIPTION and NAMESPACE files. In some functions of my package, and also in the vignette, I use the fun

Re: [Bioc-devel] SummarizedExperiment

Thanks very much. I will do that. Best wishes, Andrea From: Martin Morgan Sent: 24 October 2016 13:58:28 To: Rodriguez Martinez, Andrea; bioc-devel@r-project.org Subject: Re: [Bioc-devel] SummarizedExperiment On 10/24/2016 07:48 AM, Rodriguez Martinez, Andrea wr