Re: [Bioc-devel] updating maintainer

2018-07-05 Thread Obenchain, Valerie
Sorry - my email was out of sync and I didn't see your earlier response. I'll take of this today. Valerie On 07/05/2018 06:57 AM, Obenchain, Valerie wrote: Sam, I haven't heard back from you. Do you still want to make this change? Valerie On 06/27/2018 05:24 AM, Obenchain, Valerie wrote:

Re: [Bioc-devel] updating maintainer

2018-07-05 Thread Obenchain, Valerie
Sam, I haven't heard back from you. Do you still want to make this change? Valerie On 06/27/2018 05:24 AM, Obenchain, Valerie wrote: Hi Sam, As Kasper mentioned, you should update the maintainer field in the DESCRIPTION file of your packages. We'll also need this information: - What

Re: [Bioc-devel] tokay2 internet connectivity

2018-07-05 Thread Obenchain, Valerie
Thanks for the report. I'll look into it. Valerie On 07/02/2018 06:00 AM, Klara Kaleb wrote: Hi Bioc team, I am one of the maintainers for the OmaDB package, now in 3.7 release. The package is passing build and check on both mac and linux, however I am still experiencing an error on windows

Re: [Bioc-devel] as.data.frame for GRanges when one meta column is a data frame

2018-07-05 Thread Hervé Pagès
Hi Jialin, Note that up to BioC 3.7, as.data.frame(gr) in your example was returning a broken data.frame: > as.data.frame(gr) Error in dim(rvec) <- dim(x) : dims [product 6] do not match the length of object [1] More precisely, the call to as.data.frame(gr) is successful and returns a

Re: [Bioc-devel] as.data.frame for GRanges when one meta column is a data frame

2018-07-05 Thread Jialin Ma
Dear Hervé, It seems that the printing method is broken not because the data frame has nested data frame, but because the nested data frame has "AsIs" class, for example: > df <- data.frame(x = c(1,2)) > df$d <- data.frame(z = c(3,4)) > df x z 1 1 3 2 2 4 > str(df) 'data.frame': 2 obs. of 2