Re: [Bioc-devel] BiocCheck error

2019-08-22 Thread Martin Morgan
The requirement that the repository and package name be the same is something imposed by Biocondcutor during the submission process (it's probably best practice, but that isn't why the requirement is there); once the package is accepted it gets cloned into Bioconductor (as BioTIP) the github

Re: [Bioc-devel] GLAD quotation

2019-08-22 Thread Pariksheet Nanda
Hi Patricia, Whoops, my mistake! GLAD is indeed a Bioconductor package: $ R -q > BiocManager::available("glad") [1] "GLAD" "GladiaTOX" > You don't need to purchase any software license. You can install the package freely inside R. See:

Re: [Bioc-devel] BiocCheck error

2019-08-22 Thread Zhezhen Wang
I see, thanks Herve and Martin! Zhezhen > On Aug 22, 2019, at 6:00 AM, Martin Morgan wrote: > > The requirement that the repository and package name be the same is something > imposed by Biocondcutor during the submission process (it's probably best > practice, but that isn't why the

Re: [Bioc-devel] GLAD quotation

2019-08-22 Thread Pariksheet Nanda
Hi Patricia, You've got the wrong e-mail address. Bioconductor doesn't sell proprietary software licenses. This mailing list is for developers to discuss technical matters with the R or Bioconductor software packages. I don't know what the website or e-mail address you need for purchasing the

[Bioc-devel] GLAD quotation

2019-08-22 Thread P q
Dear Support assistant, I am a doctoral student of Dr. Nicolas Carrels at FIOCRUZ and I am in charge to ask for softwares quotations for the lab. I would like a quotation for 4 years GLAD software license and It is for non-profit research. The quotation document must contain these informations

Re: [Bioc-devel] rtracklayer::import.bw error situation when there's repeated input ranges in the "selection", leads to S4Vectors

2019-08-22 Thread Leonardo Collado Torres
Hi Michael, That was using rtracklayer 1.45.3. However I see at https://github.com/lawremi/rtracklayer/commit/90d4209eae05ae2a4af550072c35cada662b4c89 that you made a recent change. If I use the GitHub version, it all works =) > result <- rtracklayer::import(sampleFile, + selection = regs, +

Re: [Bioc-devel] DMRcate_2.0.0 and updated DMRcatedata

2019-08-22 Thread Turaga, Nitesh
Hi Tim, Based on what your have mentioned, it seems that DMRcatedata should become an experiment hub package. https://bioconductor.org/packages/devel/bioc/vignettes/ExperimentHub/inst/doc/CreateAnExperimentHubPackage.html Please take a look that vignette. Let me know if you have any

Re: [Bioc-devel] BiocCheck error

2019-08-22 Thread Pages, Herve
Or: you could just rename your NPS repo -> BioTIP and recreate a very simple NPS repo that contains only a README.md file that says: This repository has been moved to https://github.com/xyang2uchicago/BioTIP That kind of redirect should be OK from the grant submission perspective. H. On