[Bioc-devel] rstan related build error on tokay2

2020-04-15 Thread Simo Kitanovski
Dear all, I have noticed that 3 packages that depend on rstan (genphen, IgGeneUsage and banocc) seem to have build errors only on tokay2. The error messages are the same: /Compiling model ... Error: C++14 standard requested but CXX14 is not defined Execution halted/ This error and the

[Bioc-devel] Announcement: Update to Rhdf5lib

2020-04-15 Thread Mike Smith
Dear all, This is a heads up that I've updated the version of HDF5 distributed in Rhdf5lib to 1.10.6. The change was principally motivated to allow the use of the S3 virtual file driver allowing read access to HDF5 files stored in S3 buckets. As such the library compilation now uses the

[Bioc-devel] Got timeout for machv2 BUILD

2020-04-15 Thread Jianhong Ou, Ph.D.
Hi, Hope you are doing well. I got timeout for my package motifStack in machv2. The ellapsedTime is 2403.0 seconds while in tokay2 is 82.1 seconds and in malbec2 is 126.1 seconds. I have limited information how to debug. Could you share your suggestion? Thank you. Yours Sincerely, Jianhong

[Bioc-devel] credentials/authors for MTseeker, biscuiteer, and data packages corresponding to each

2020-04-15 Thread Tim Triche, Jr.
Hi Nitesh, I'm the actual maintainer of MTseeker and the person who currently gets emails about biscuiteer. However, Jacob Morrison is the person who actually maintains biscuiteer. At some point my credentials for bioc-git seem to have become interchanged with jacob's, and when I went to fix

Re: [Bioc-devel] Access issues to package fcoex

2020-04-15 Thread Turaga, Nitesh
Thanks for the information. This helped me resolve your issue quickly. Please try again now. Best, Nitesh > On Apr 15, 2020, at 12:28 PM, Tiago Lubiana Alves > wrote: > > Thanks Nitesh, > > Adding more information about the issue: > > 1 - My remotes seem to be set up correctly. > > $

Re: [Bioc-devel] Access issues to package fcoex

2020-04-15 Thread Tiago Lubiana Alves
Thanks Nitesh, Adding more information about the issue: *1 - My remotes seem to be set up correctly. * *$ git remote -v * origin g...@github.com:csbl-usp/fcoex.git (fetch) origin g...@github.com:csbl-usp/fcoex.git (push) upstreamg...@git.bioconductor.org:packages/fcoex.git (fetch)