I am looking for a simple way to extract all of the genes and their
coordinates. For transcripts, it is simple to use the trancripts function and
directly get a GRanges result. For genes, I thought I could use the select
function, but it does not provide the ability to select gene coordinates. T
On 07/16/2013 05:46 PM, Kasper Daniel Hansen wrote:
This is a great idea.
Comments
1) Latex dependencies. Hopefully this style will be adopted throughout Bioc, so
any latex dependencies will be actual dependencies for building and checking
packages. Not everyone works on a system where everyt
Thanks Renaud for your comments.
On 07/21/2013 11:52 PM, Renaud wrote:
Hi,
this package is a nice idea indeed. For what is worth, I developed a similar
feature within the pkgmaker package (on CRAN), especially to enable easy
CRAN/Bioc package referencing/linking, with the inclusion of an extra
On 07/22/2013 01:56 PM, Maintainer wrote:
Dear BiocStyle-Maintainer,
I try to use BiocStyle (0.0.13) in a knitr vignette. It seems both knitr and
BiocStyle include the color package with different options (knitr: without any
option; BiocStyle with usenames,dvipsnames). That's why "R CMD build" f
Dear BiocStyle-Maintainer,
I try to use BiocStyle (0.0.13) in a knitr vignette. It seems both knitr and
BiocStyle include the color package with different options (knitr: without any
option; BiocStyle with usenames,dvipsnames). That's why "R CMD build" fails:
...
* installing the package to re-b
Hi Ge,
On 07/22/2013 02:59 AM, Ge Tan wrote:
Hi Hervé,
Thank you very much!
So how about Calloc? Does it run much slower than the direct malloc() too?
Calloc() is just a wrapper to calloc() so it's also user-controlled
memory (like malloc()). The difference with malloc() is that it sets the
m
Hi Hervé,
Thank you very much!
So how about Calloc? Does it run much slower than the direct malloc() too?
Best,
Ge
> Date: Fri, 19 Jul 2013 17:05:30 -0700
> From: hpa...@fhcrc.org
> To: ge_...@live.com
> CC: bioc-devel@r-project.org
> Subject: Re: [Bioc-d
