[Bioc-devel] 'BiocInstaller' package not in repository error during nightly build

2014-10-16 Thread Kevin Rue-Albrecht
Hi Bioconductors, I got the *BUILD* ERROR report below on all platforms last night. Given the fact that I didn't update my package since the last (successful) build, and the error ''BiocInstaller' package not in repository'', I have a feeling this is due to a problem on the build platforms ? In

Re: [Bioc-devel] 'BiocInstaller' package not in repository error during nightly build

2014-10-16 Thread Robert Castelo
hi Kevin, if you're talking about the devel version of BiocInstaller, the SVN logs show a commit yesterday with some correction on the BiocInstaller package, just svn the last version if you don't want to wait until the newer version gets built: vn export --username readonly --password

Re: [Bioc-devel] 'BiocInstaller' package not in repository error during nightly build

2014-10-16 Thread Dan Tenenbaum
- Original Message - From: Robert Castelo robert.cast...@upf.edu To: Kevin Rue-Albrecht kevin@ucdconnect.ie Cc: bioc-devel@r-project.org Sent: Thursday, October 16, 2014 3:24:32 AM Subject: Re: [Bioc-devel] 'BiocInstaller' package not in repository error during nightly build

Re: [Bioc-devel] Bioonductor package tracker has moved

2014-10-16 Thread zhao shilin
Yes. It works for me now. Thank you! Best, Shilin 2014-10-16 4:18 GMT-05:00 Kevin Rue-Albrecht kevin@ucdconnect.ie: Hi all, Tim, Just for a second validation, I can log in again too while I couldn't yesterday as described in this thread. Anyway, thanks for fixing it so rapidly!

Re: [Bioc-devel] runnable examples for internal function ?

2014-10-16 Thread Hervé Pagès
Hi Tiphaine, On 10/15/2014 06:30 AM, Martin, Tiphaine wrote: Hi Herve, Thank you for your email. very useful. But I updated my NAMESPACE in order to list only functions that I want to export. Even if I did that and if in addition, I keep different man files for functions that I do not want

Re: [Bioc-devel] runnable examples for internal function ?

2014-10-16 Thread Martin, Tiphaine
Yep you guess well about my colleagues :) sorry. Thank you for your advices. Tiphaine From: Hervé Pagès hpa...@fhcrc.org Sent: 16 October 2014 19:43 To: Martin, Tiphaine; Michael Lawrence; Dan Tenenbaum Cc: bioc-devel@r-project.org Subject: Re:

Re: [Bioc-devel] runnable examples for internal function ?

2014-10-16 Thread Dan Tenenbaum
- Original Message - From: Hervé Pagès hpa...@fhcrc.org To: Tiphaine Martin tiphaine.mar...@kcl.ac.uk, Michael Lawrence lawrence.mich...@gene.com, Dan Tenenbaum dtene...@fhcrc.org Cc: bioc-devel@r-project.org Sent: Thursday, October 16, 2014 11:43:32 AM Subject: Re: [Bioc-devel]

Re: [Bioc-devel] runnable examples for internal function ?

2014-10-16 Thread Leonardo Collado Torres
On Thu, Oct 16, 2014 at 7:42 PM, Dan Tenenbaum dtene...@fhcrc.org wrote: - Original Message - From: Hervé Pagès hpa...@fhcrc.org To: Tiphaine Martin tiphaine.mar...@kcl.ac.uk, Michael Lawrence lawrence.mich...@gene.com, Dan Tenenbaum dtene...@fhcrc.org Cc: