For the record: see https://support.bioconductor.org/p/62283 which includes a
reply.
On 25 Oct 2014, at 21:07, Joseph Nathaniel Paulson jpaul...@umiacs.umd.edu
wrote:
Hello,
I'm in the process of writing a few wrappers for loading and writing out
files in the biom-format
I guess I'm thinking now to move toward breaking up the PCA and plot
in DESeq2, given that there is non-trivial computation going on, and
then to leave plotPCA as a wrapper and to avoid breaking any user
code. We had already moved this way a bit, in that in the current
release, plotPCA has an
- Original Message -
From: Leonardo Collado Torres lcoll...@jhu.edu
To: bioc-devel@r-project.org
Cc: Jeff Leek jtl...@gmail.com
Sent: Friday, October 31, 2014 4:05:11 AM
Subject: [Bioc-devel] More than 1 citation in landing page
Hi,
I'm wondering if it's possible to display
I see the argument for separating plotting and computation.
I don't see the argument for changing plotPCA to plot. base R has things
that work either way; we all know hist(), boxplot() etc etc. And for this
specific case there are (good) arguments for the fact that one could
envision several
