hi Martin,
I noticed with GenomicRanges 1.19.51, a new, or newly functional,
check on dimnames differing between assays.
It might be convenient to add an option that assays() will take an
incoming matrix without error no matter what, even if the dimnames on
the incoming matrix are not the same
On Fri, Apr 3, 2015 at 7:32 AM, Michael Love
michaelisaiahl...@gmail.com wrote:
hi Martin,
I noticed with GenomicRanges 1.19.51, a new, or newly functional,
check on dimnames differing between assays.
ah, I'm still using 1.19.50, maybe that's the issue. But I'd still
like to hear what the new
Hello,
I am the maintainer of a Bioconductor package called 'HTSFilter' that
imports DESeq2. On today's build report, I see that my package (as well
as DESeq2 and all of the other packages that import it) is showing an
error message which seems to arise from a recent change in the DESeq2
code
hi Andrea,
I sent out an email to bioc-devel at the same time as you :)
https://stat.ethz.ch/pipermail/bioc-devel/2015-April/007269.html
I think this might be fixed already, but I didn't have time to try out
GenomicRanges 1.19.51 yet.
I will try soon, and if this doesn't fix it, I have a hack
On 04/03/2015 04:37 AM, Andrea Rau wrote:
Hello,
I am the maintainer of a Bioconductor package called 'HTSFilter' that
imports DESeq2. On today's build report, I see that my package (as well
as DESeq2 and all of the other packages that import it) is showing an
error message which seems to arise
On Fri, Apr 3, 2015 at 2:00 PM, Paul Shannon
paul.thurmond.shan...@gmail.com wrote:
Hi Michael,
Great to get your response, comments and questions. Answers attempted
below.
I think our overriding difference lies in our contrasting experience of
complexity. I have come to see websockets
Now available at http://bioconductor.org/help/newsletters/2015_April/
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Bioc-devel@r-project.org mailing list
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Thanks to Val's excellent newsletter, I've had my first glance at
BrowserViz. I'm glad to see something that is more flexible and low-level
than e.g. shiny.
I'm curious about the motivation behind web sockets. I guess any
application with an R-driven web UI actually has two UIs: the R console and
Forgot to add bioc-devel
On Fri, Apr 3, 2015 at 4:55 PM, Leonardo Collado Torres
lcoll...@jhu.edu wrote:
Hi,
From the April newsletter I got curious about BrowserViz but I
couldn't run the simple example as-is. From
http://bioconductor.org/checkResults/devel/bioc-LATEST/BrowserViz/ I
can
