Re: [Bioc-devel] Classes to be supported by ggraph

2016-02-06 Thread Wolfgang Huber
Dear Thomas thank you for asking about this. The main information in a graphNEL is, of course, the vector of nodes (character) and a list of edges. That information can for sure go into an igraph. Then there is the slot `renderInfo`, which afaIu is (or can be) used to control how the graph

Re: [Bioc-devel] Classes to be supported by ggraph

2016-02-06 Thread Kasper Daniel Hansen
>From my perspective Rgraphviz now has a quite good (cross-platform) access to the Graphviz layout routines. But how to actually use these routines from R is certainly something I think could be vastly improved upon. Right now, Rgraphviz basically has two different interfaces to graph layout and

[Bioc-devel] Classes to be supported by ggraph

2016-02-06 Thread Thomas Lin Pedersen
I’m in the process of developing ggraph (https://github.com/thomasp85/ggraph) - An extensive plotting framework for graph/tree/network data based on ggplot2. Currently the class support is focused on igraph and dendrogram, but the idea is to extend it with support for additional graph