Re: [Bioc-devel] Odd behavior by R CMD check

2016-03-11 Thread Henrik Bengtsson
If you have R-devel you can get those NOTEs using: R CMD check --as-cran *.tar.gz (It's been reported by --as-cran since Oct 2015 or so). /Henrik On Fri, Mar 11, 2016 at 2:45 PM, Hartley, Stephen (NIH/NHGRI) [F] wrote: > Thanks. I'll try that. I'm surprised, as my

Re: [Bioc-devel] Odd behavior by R CMD check

2016-03-11 Thread Martin Morgan
On 03/11/2016 05:45 PM, Hartley, Stephen (NIH/NHGRI) [F] wrote: Thanks. I'll try that. I'm surprised, as my local R-Devel install isn't that old. I used to have a few specific imports like this, but I was told to remove them because BiocCheck did not like them (because these packages were

Re: [Bioc-devel] Odd behavior by R CMD check

2016-03-11 Thread Hartley, Stephen (NIH/NHGRI) [F]
Thanks. I'll try that. I'm surprised, as my local R-Devel install isn't that old. I used to have a few specific imports like this, but I was told to remove them because BiocCheck did not like them (because these packages were not declared in the "imports" line of the DESCRIPTION). I don't

[Bioc-devel] Odd behavior by R CMD check

2016-03-11 Thread Hartley, Stephen (NIH/NHGRI) [F]
I'm seeing some odd behavior by the R CMD check command for my package, JunctionSeq. http://bioconductor.org/checkResults/3.3/bioc-LATEST/JunctionSeq/zin2-checksrc.html It's not technically throwing warnings (just a "NOTE"), but it is claiming that there's no global definition for functions

Re: [Bioc-devel] Your branch and 'bioc/master' have diverged

2016-03-11 Thread Luca De Sano
But, after the what you suggest, git and svn be will synchronized? -- Luca De Sano Research Associate Department of Informatics, Systems and Communication University of Milan Bicocca Institute of Biomembranes and Bioenergetics of the Italian National Research Council (IBBE-CNR) email: