Re: [Bioc-devel] BiomartGeneRegionTrack question

2016-07-20 Thread James W. MacDonald
Hi Holly, This list is intended for those that are developing packages. Your question should be asked on the support site (https://support.bioconductor.org). Please repost over there. Best, Jim On Wed, Jul 20, 2016 at 2:04 PM, Holly wrote: > Dear Bioconductor helpers,

[Bioc-devel] Conflicting Imports in Namespace

2016-07-20 Thread Aaron Taudt
Hi, I have a package which imports the two functions ggdendro::segment and DNAcopy::segment. This leads to a warning message when checking the package: Warning: replacing previous import ‘DNAcopy::segment’ by ‘ggdendro::segment’ when loading ‘AneuFinder’ How can I avoid this warning and

Re: [Bioc-devel] Increasing MAX_BUFLENGTH in S4Vectors src/AEbufs.c

2016-07-20 Thread Hervé Pagès
Hi Pete, On 07/19/2016 06:59 PM, Peter Hickey wrote: I hit an error when calling reduce() on a very big GRanges object (length = 1170402558). The error was: Error in .Call2("CompressedIRangesList_reduce", x, drop.empty.ranges, : _get_new_buflength(): MAX_BUFLENGTH reached I found