Hello,
Thank you for bringing this to our attention. For now please ignore this
WARNING.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
From: B
I'm looking into this issue. Please do not be alarmed, I will be manually
kicking off a new build for your package.
Lori Shepherd
Bioconductor Core Team
Roswell Park Cancer Institute
Department of Biostatistics & Bioinformatics
Elm & Carlton Streets
Buffalo, New York 14263
___
Annotation package contributors,
The release of Bioconductor 3.4 is October 18 and the deadline for
contributed annotations is October 13. See the full release schedule here:
http://www.bioconductor.org/developers/release-schedule/
The new db0 packages are in devel and ready for use; all have
On 09/27/2016 06:00 PM, Dario Strbenac wrote:
Good day,
file <- system.file("extdata", "chr22.vcf.gz", package = "VariantAnnotation")
anotherFile <- system.file("extdata", "hapmap_exome_chr22.vcf.gz", package =
"VariantAnnotation")
aSet <- readVcf(file, "hg19")
system.time(commonMutations <- re
Dario's computer is faster than mine
> system.time(commonMutations <- readVcf(anotherFile, "hg19",
rowRanges(aSet)))
user system elapsed
426.271 57.296 483.766
The disk infrastructure is a determinant of throughput. Most VCF queries
are decomposable and can be parallelized. After
chunki
Dear list,
The automated building of our package on Windows seems to yield a warning I
don't think I can resolve (see [1]).
The relevant error is:
Error in loadNamespace(i, c(lib.loc, .libPaths()), versionCheck = vI[[i]]) :
there is no package called 'digest'
Error: package 'pkgmaker' could n
Hi Henrik,
thanks for spotting this and for your notification! Indeed, there seem to
be some problem with building package landing pages, I will look into this.
Cheers,
Andrzej
On Thu, Sep 22, 2016 at 1:29 AM, Henrik Bengtsson <
henrik.bengts...@gmail.com> wrote:
> I've noticed this for a while
