[Bioc-devel] Automatic build failure notifications

2016-10-10 Thread Schymanski, Emma
Hi Herve, Markus, all, It would really be great if these automatic notifications would be on again - and if this would happen for devel and release. After my last email Dan T. suggested I sign up for the RSS feed - I followed the instructions but even there I seem only to get an old feed of t

Re: [Bioc-devel] DeepBlueR check error

2016-10-10 Thread Hervé Pagès
Hi Markus, On 10/10/2016 04:00 AM, Markus List wrote: Hi, We noticed that our package DeepBlueR had a package check error that was introduced in our last commit and that we fixed today. Can our package can still make it into the release list? Yes. We would also appreciate it to have the e-

[Bioc-devel] flowCore fails with GCC 4.4.7 on RHEL 6.0

2016-10-10 Thread Kasper Daniel Hansen
Latest version (1.39.11). My guess is that this is a case of the author using C++ stuff which is not support on 4.4.7. ** libs /usr/bin/g++ -std=c++0x -I/jhpce/shared/community/compiler/gcc/4.4.7/R/3.3.x/lib64/R/include -DNDEBUG -I../inst/include/ -I/usr/local/include -I"/jhpce/shared/community/

[Bioc-devel] DeepBlueR check error

2016-10-10 Thread Markus List
Hi, We noticed that our package DeepBlueR had a package check error that was introduced in our last commit and that we fixed today. Can our package can still make it into the release list? We would also appreciate it to have the e-mail system for failed builds / checks back online :-) Best regar

Re: [Bioc-devel] RMassBank build error

2016-10-10 Thread Laurent Gatto
On 10 October 2016 08:46, Stravs, Michael wrote: > Hi Laurent, > >> I don't think that your initialize method will work as it is, because it >> passess >> arguments to callNextMethod, which doesn't have them. But, to be honest, I >> don't think that any intialize method will sort the current pro

Re: [Bioc-devel] RMassBank build error

2016-10-10 Thread Rainer Johannes
I followed Kasper's suggestion and removed the new("Versioned") calls from the prototype of the Spectrum, Spectrum1 and Spectrum2 classes and added the corresponding calls (e.g. classVersion(.Object)["Spectrum1"] <- "0.2.0") to the objects' initialize methods. With that setup I don't get (thus f

Re: [Bioc-devel] RMassBank build error

2016-10-10 Thread Stravs, Michael
Hi Laurent, > I don't think that your initialize method will work as it is, because it > passess > arguments to callNextMethod, which doesn't have them. But, to be honest, I > don't think that any intialize method will sort the current problem. The method did work with MSnbase until the recent c