Thanks Valerie --- this makes complete sense, but I did not think about it.
Might be good to post to the new package development FAQ if not there already.
> On Jan 26, 2017, at 5:20 PM, Obenchain, Valerie
> wrote:
>
> It's good practice to bump the version as part of
> your final commit. When
This should have said 2:15pm PST deadline, not 2:25pm.
> Looking at the svn logs for LOBSTAHS in devel, there were quite a few
> commits on Jan 25. About 1/3 were before the 2:25pm deadline. These were
> probably the commits that straddled the deadline:
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Hi,
Just to clarify, we do have daily software builds that start at 2:15pm
PST. We did not have a devel build report this week on Tuesday, Jan 24
due to a problem with the postrun script. AFAIK that is the only day
this week we haven't had a full build report.
Looking at the svn logs for LOBSTAHS
Dear all,
we are currently in the middle of refactoring and updating the xcms package,
which could cause (on the short term) some problems in packages depending on
functionality from xcms. In the long run everything should work and integration
of functionality from xcms in other packages should
Traditionally we have had daily builds, which then takes more than 12h to
complete. Recently, the daily build schedule has been more intermitten - I
don't know for sure but I thought we were back to daily builds.
Still, there can be a big delay due to build time and start, like up to
36h. But it
Hi,
We're working on resolving the issue. Sorry for the trouble.
Michael
On Thu, Jan 26, 2017 at 9:25 AM, Kathleen Klein <
kathleen.kl...@mail.mcgill.ca> wrote:
> A number of packages are failing in the recent build of R-devel due to
> rtracklayer.
> Any news on a fix for rtracklayer?
> I am ge
Dear all,
Since Dan, who was always very helpful and took care of the special
requirements of my package 'xps', is no longer part of the BioC group,
and I do not know who is currently responsible for the BioC servers, I
am writing to you to inform you of the problem building 'xps' on the new
This isn't a question for Bioc-devel, which is intended for questions about
package development. In future, please use the support site,
https://support.bioconductor.org
That said, I have checked in a fix which should propagate through the build
servers in the next day or two. In the meantime you
A number of packages are failing in the recent build of R-devel due to
rtracklayer.
Any news on a fix for rtracklayer?
I am getting the following error when R is trying to load the rtracklayer.so
file
unable to load shared object rtracklayer.so: undefined symbol:
append_string_to_CharAEAE
Kath
Thanks, Kasper. On your second point: Yes, several recent updates. The bump to
v1.1.2 was two days ago, so I figured that would have been reflected in a newer
build already. I will give it a few more days.
Jamie
> On Jan 26, 2017, at 11:57 AM, Kasper Daniel Hansen
> wrote:
>
> It happens in
It happens in devel that your dependencies fail and then your package
fails. Right now XCMS fails in devel because mzR fails. That will
presumably be sorted out.
The latest build report
http://bioconductor.org/checkResults/3.5/bioc-LATEST/LOBSTAHS/
is 1.1.1. Did you do a couple of updates ver
Hi all:
Two questions regarding the LOBSTAHS package:
1. Dev build seems to be failing (“error”) on toluca2 after I pushed some
updates from our git repository to Bioc svn. Error is:
* installing to library
‘/Library/Frameworks/R.framework/Versions/3.4/Resources/library’
ERROR: dependencies ‘xc
When using this code
WEHAsum = read.csv("/tmp/wehasum.csv", check.names = FALSE, as.is=TRUE)
plotPCA(as.matrix(WEHAsum[,-1][,sort(colnames(WEHAsum[,-1]))]),
x.coord=-20, y.coord=20)
I get
Error in (function (classes, fdef, mtable) :
unable to find an inherited method for function 'plotPCA' fo
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