Re: [Bioc-devel] Bioconductor extra/ repository

These are the dependencies in extra/: - a4 (and family) uses nlcv - RCytoscape uses XMLRPC - microRNA uses Rlibstree - arrayQualityMetrics uses SVGAnnotation - AnalysisPageServer uses SVGAnnotation Valerie On 07/21/2017 05:58 AM, Michael Lawrence wrote: You can just look at the package

[Bioc-devel] Bioc integration with IPFS

Hi all, I am thinking of a opensource platform which will be built on top of IPFS ( https://medium.com/@ConsenSys/an-introduction-to-ipfs-9bba4860abd0) I recently found out that NCBI/NIH is struggling with the large amounts of data that is being generated from non-human genomes and is now

Re: [Bioc-devel] Bioconductor extra/ repository

You can just look at the package splash page and see the deps without links. On Fri, Jul 21, 2017 at 5:56 AM, Kasper Daniel Hansen wrote: > Might be useful to list their dependencies in /extra, in case you want more > eyes to look at this? > > On Fri, Jul 21, 2017

Re: [Bioc-devel] Bioconductor extra/ repository

Might be useful to list their dependencies in /extra, in case you want more eyes to look at this? On Fri, Jul 21, 2017 at 8:44 AM, Obenchain, Valerie < valerie.obench...@roswellpark.org> wrote: > Hi, > > On August 7, 2017 we are planning to deprecate the devel Bioconductor > extra/ repository.

[Bioc-devel] Bioconductor extra/ repository

Hi, On August 7, 2017 we are planning to deprecate the devel Bioconductor extra/ repository. We currently maintain 4 Bioconductor repositories: software, annotation, data experiment and extra. > library(BiocInstaller) > biocinstallRepos() BioCsoft

Re: [Bioc-devel] adding multiple vignettes not all should be processed by the build-system

Hi Maarten The most pragmatic way is perhaps to add a regular .Rmd file into the "vignettes/" directory, which does nothing but link (or even redirect?) to the prebuilt HTML file. (Not sure whether that can even be in the same directory, or whether it's better to put it somewhere under