Re: [Bioc-devel] Catching SVN up to Github

2017-07-31 Thread Matt Richards
Yes, that's correct; Martin helped us make that change a few weeks ago and it appears the svn-remote* in the config file are also updated: svn-remote.devel.url=https://hedgehog.fhcrc.org/bioconductor//trunk/madman/ Rpacks/trena svn-remote.devel.fetch=:refs/remotes/git-svn-devel On Fri, Jul 28,

Re: [Bioc-devel] transitioning scater/scran to SingleCellExperiment

2017-07-31 Thread Aaron Lun
Dear developers, Both scater and scran will be migrating to the SingleCellExperiment class (https://bioconductor.org/packages/SingleCellExperiment) in the next BioC release. This is based on a SummarizedExperiment and provides a more modern user interface, as well as supporting different matrix

Re: [Bioc-devel] Change in BSgenome.Hsapiens.UCSC.hg19_1.4.0.tar.gz

2017-07-31 Thread Janssen-10, R.R.E.
Hello Hervé, > Hi, > > On 07/30/2017 03:28 AM, Janssen-10, R.R.E. wrote: >> Hello, >> >> So, are you absolutely sure nothing has changed in this package? > > All I'm saying it that version 1.4.0 of this package has not changed > since it was first made on May 13, 2014. Before version 1.4.0, we