[Bioc-devel] Pandoc on Build Computers

2017-11-14 Thread Dario Strbenac
Good day, In the vignette of ClassifyR, I have institute: The University of Sydney, Australia at the top. institute has been a valid entry since version 1.17 of Pandoc released in 2016. Could Pandoc on the Bioconductor computers be updated? I notice that version 2.0.2 is available since

Re: [Bioc-devel] annotation data not updated?

2017-11-14 Thread James W. MacDonald
On Thu, Nov 9, 2017 at 9:48 AM, Van Twisk, Daniel < daniel.vantw...@roswellpark.org> wrote: > Thanks for looking into this. New versions of the OrgDbs and Db0s > (v3.5.0) are now available that have up-to-date resources. Here is the > output of the new org.Hs.eg.db Does this issue affect the

Re: [Bioc-devel] Issues with access to Bioconductor repository: multiClust

2017-11-14 Thread Turaga, Nitesh
Hi, My record shows that you’ve submitted your key at (Tuesday) 14/11/2017 15:35:17. We process the keys around noon every day (EST). You should have received a notification on the google form after submission that it takes 1 business day. I’ll make an exception and reprocess this now. You

[Bioc-devel] Issues with access to Bioconductor repository: multiClust

2017-11-14 Thread Nathan Lawlor
Hello, I originally submitted the package "multiClust" to Bioconductor through svn (my user SVN id was: "n.lawlor"). On Monday (11/14/2017) I completed the git/svn transition form: ( https://docs.google.com/forms/d/e/1FAIpQLSdlTbNjsQJDp0BA480vo4tNufs0ziNyNmexegNZgNieIovbAA/viewform) providing my

Re: [Bioc-devel] Single Package Builder / Package Submission

2017-11-14 Thread Shepherd, Lori
Thank you. Our transitions are complete. New packages will now be built agains R 3.5 and Bioc 3.7. Until the CRAN binaries are available for windows we will temporarily not be building on windows See related post: https://stat.ethz.ch/pipermail/bioc-devel/2017-November/012265.html Lori

[Bioc-devel] Single Package Builder / Package Submission

2017-11-14 Thread Shepherd, Lori
We will begin to update the single package builders used to build and check new package submission to R 3.5 Bioc 3.7 today. While this is occurring the single package builder will be off line and there will be no builds for newly submitted packages. Thank you for your patience and

Re: [Bioc-devel] How much does it takes for a package to appear at Bioconductor.org after a push?

2017-11-14 Thread Shepherd, Lori
It normally can take up to 24 hrs to appear on the build report after pushing changes depending on when the changes were pushed. We pull changes once a day and propagate to the landing page only if there was a version bump and successful build. Lori Shepherd Bioconductor Core Team Roswell