Re: [Bioc-devel] error in loading pbdMPI on tokay2

Hi Valerie, Thanks for your reply. I can make it work using snow I believe. But the problem is that all functions in these packages that you have suggested (including snow; as far as I have seen) return the answer to one node and then if I want all nodes to have the same answer I will need to

Re: [Bioc-devel] rsvg on mac

Hi Kevin, CRAN binaries for El Capitan in devel aren't available. You can see this on the rsvg landing page: https://cran.r-project.org/web/packages/rsvg/index.html Nothing we can do until CRAN makes them available. Valerie On 02/07/2018 08:29 AM, Kevin Horan wrote: The ChemmineR build is

[Bioc-devel] release build of ChemmineR failing

The release version of ChemmineR is failing on windows. It seems to be a build script issue though, possibly something on your side. The package was building fine a few weeks ago and I have not modified it. Can you please have a look? Thanks. "C:/Users/BIOCBU˜1/BBS-3˜1.6-B/R/bin/Rscript" -e

[Bioc-devel] rsvg on mac

The ChemmineR build is failing on the mac due to a new dependency not being available, the package "rsvg". Would it be possible to install that on the mac build machine? Thanks. http://bioconductor.org/checkResults/devel/bioc-LATEST/ChemmineR/merida2-install.html Kevin

Re: [Bioc-devel] Nightly builds

On Wed, Feb 7, 2018 at 10:36 AM, Leonardo Collado Torres wrote: > Hi, > > I try to follow all the best practices but sometimes I end up relying > on the Bioc nightly build. > > Anyhow, I personally use r-travis** for quick checks to detect broken > commits instead of running R

Re: [Bioc-devel] Nightly builds

Hi, I try to follow all the best practices but sometimes I end up relying on the Bioc nightly build. Anyhow, I personally use r-travis** for quick checks to detect broken commits instead of running R CMD check/build on my laptop. This way I can submit a new commit that fixes a broken commit

Re: [Bioc-devel] Nightly builds

I've found this Makefile from Laurent et al makes it a lot easier to do build/check, getting closer to the ease of devtools while still building and checking from command line: https://github.com/ComputationalProteomicsUnit/maker You do: git clone

[Bioc-devel] Nightly builds

Bioc developers! I've been exploring the Bioconductor nightly builds http://bioconductor.org/checkResults/ a bit using this in-development package. https://github.com/mtmorgan/BiocBuildReports This rpt <- report() filter_recent(rpt) %>% print(n = n()) summarizes the packages

Re: [Bioc-devel] cannot git (the package Pi)

We name our release branches in the manner `RELEASE_3_6`. There is no branch `1.6.0`. As a maintainer you can only push to `master` and `RELEASE_3_6`. You need to do something like, git checkout RELEASE_3_6 ## Fix the bugs git commit git push origin

Re: [Bioc-devel] cannot git (the package Pi)

Hi Nitesh Following the instructions at http://bioconductor.org/developers/how-to/git/maintain-bioc-only/, I have successfully made changes to the development version (1.7.0 in my case). However, following the instructions at