Re: [Bioc-devel] errors on Windows 3.7 builds

For reasons unknown, the stringi package took a long time to compile on tokay2 yesterday or possibly it may have hung. We have a limit of 40 minutes for installation (to avoid infinite timeouts) after which the process gets killed. When the installation of stringi was killed, a lock file was

[Bioc-devel] errors on Windows 3.7 builds

Please ignore the errors on the3.7 Windows builds today. Something obviously went wrong as there are 933 build failures. We're looking into it. Valerie This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the

Re: [Bioc-devel] Strange error for windows build

These functions all come from the stringi package. My first thought wpuld be a namespace conflict. Cheers Joris On Thu, 3 May 2018, 18:58 Christopher John, wrote: > Dear Bioconductor > > I am getting a new weird error from today I think with my M3C package: > >

[Bioc-devel] Strange error for windows build

Dear Bioconductor I am getting a new weird error from today I think with my M3C package: http://bioconductor.org/packages/3.7/bioc/html/M3C.html Error in namespaceExport(ns, exports) : undefined exports: %s!=%, %s!==%, %s+%, %s<%, %s<=%, %s==%, %s===%, %s>%, %s>=%, %stri!=%, %stri!==%,

Re: [Bioc-devel] "Reviving" an existing workflow

Hello Lori, thanks a lot for your prompt and your constructive feedback!  We will revise the workflow accordingly and then submit it  to the submission tracker. Cheers, Bernd On Do, 2018-05-03 at 15:50 +, Shepherd, Lori wrote: > Hello Bernd,  > > Thanks for reaching out.  It looks like

[Bioc-devel] Common Windows build problems for `CountClust` and `Logolas`

Hi, Two of my packages - CountClust and Logolas - are showing the same error in Windows build. http://bioconductor.org/checkResults/release/bioc-LATEST/Logolas/ http://bioconductor.org/checkResults/release/bioc-LATEST/CountClust/ The problem has been picked up inside the last day as the build

[Bioc-devel] no Mac in devel build report today

We had a reachability problem with the devel Mac builder yesterday. We're getting things sorted out and merida1 should be back in the builds tomorrow. Valerie This email message may contain legally privileged and/or confidential information. If you are not the intended recipient(s), or the

[Bioc-devel] "TissueEnrich" is failing on windows server in the BioC 3.7 build

Hi All, My package "TissueEnrich" which was building and installing fine on all the servers is suddenly failed on the windows server in today's build report. The report says that * checking for file 'TissueEnrich/DESCRIPTION' ... OK * preparing 'TissueEnrich': * checking DESCRIPTION

Re: [Bioc-devel] Email no longer active

Hi Valerie, That’s great, it’s working for me! Thank you so much for the quick action! All the best Maria On Thu, 3 May 2018 at 15:20, Obenchain, Valerie < valerie.obench...@roswellpark.org> wrote: > OK you should be good to go. Try activating your account with your new > email and you should

Re: [Bioc-devel] "Reviving" an existing workflow

Hello Bernd, Thanks for reaching out. It looks like the last build on Jenkin's was two release cycles ago (Oct 2), because of the time lapse and that there have been quite a few changes to depending packages, and that it was never "published", we would recommend putting the workflow on the

Re: [Bioc-devel] Email no longer active

OK you should be good to go. Try activating your account with your new email and you should see the SSH key we have on file for you. Valerie On 05/03/2018 06:37 AM, Maria Keays wrote: Hi Valerie, Thanks very much. My GitHub username is mkeays and the email is

Re: [Bioc-devel] Email no longer active

Hi Valerie, Thanks very much. My GitHub username is mkeays and the email is maria.ke...@gmail.com . Thanks! Maria On Thu, 3 May 2018 at 14:10, Obenchain, Valerie < valerie.obench...@roswellpark.org> wrote: > Hi Maria, > > I can help you with this. I need the email you want the account under

Re: [Bioc-devel] Email no longer active

Hi Maria, I can help you with this. I need the email you want the account under and your github username. Valerie On 05/03/2018 04:20 AM, Maria Keays wrote: Hello, I�m not sure if this is the right place for this so apologies if not, but: my Bioconductor developer account is associated

[Bioc-devel] Email no longer active

Hello, I’m not sure if this is the right place for this so apologies if not, but: my Bioconductor developer account is associated with an email address which is no longer active (mke...@ebi.ac.uk), and what with one thing and another I didn’t manage to change it before the account was

[Bioc-devel] "Reviving" an existing workflow

Dear Bioc Team, I submitted a Microarray workflow some time ago (using SVN / Jenkins) to Bioconductor, but I never published it at the (now retired) workflow page.   Upon a recent request by the Bioc Team, I changed into a package, which is now at: packages/maEndToEnd on the Bioconductor git