Re: [Bioc-devel] Block bootstrap for GenomicRanges

2018-08-13 Thread Hervé Pagès
That helps. I think I start to understand what you are after. See below... On 08/13/2018 06:07 PM, Michael Love wrote: dear Hervé, Thanks for the quick reply about directions to take this. I'm sorry for not providing sufficient detail about the goal of block bootstrapping in my initial post.

Re: [Bioc-devel] Block bootstrap for GenomicRanges

2018-08-13 Thread Michael Love
dear Hervé, Thanks for the quick reply about directions to take this. I'm sorry for not providing sufficient detail about the goal of block bootstrapping in my initial post. Let me try again. For a moment, let me ignore multiple chromosomes/seqs and just focus on a single set of IRanges. The

Re: [Bioc-devel] Block bootstrap for GenomicRanges

2018-08-13 Thread Hervé Pagès
Hi Michael, On 08/13/2018 01:39 PM, Michael Love wrote: dear Bioc-devels, From a conversation on Twitter [1], I've been wondering if there has been any work to implement block bootstrap for GRanges. I guess that's my main question, and then the rest is details and ideas in case it hasn't

[Bioc-devel] Block bootstrap for GenomicRanges

2018-08-13 Thread Michael Love
dear Bioc-devels, >From a conversation on Twitter [1], I've been wondering if there has been any work to implement block bootstrap for GRanges. I guess that's my main question, and then the rest is details and ideas in case it hasn't already been done. The block bootstrap helps to create

Re: [Bioc-devel] tokay2 internet connectivity

2018-08-13 Thread Obenchain, Valerie
Just to close the loop on this - the conversation went off-line and was resolved. When the omabrowser server OS was changed from Ubuntu to CentOS the problems on the Windows builders went away. Valerie On 07/23/2018 08:14 AM, Obenchain, Valerie wrote: Hi Klara, Unfortunately I still don't

Re: [Bioc-devel] EXTERNAL: Single Package Builder Updates

2018-08-13 Thread Shepherd, Lori
Thank you for your patience. The Single Package Builder should now be updated and functioning properly. Cheers, Lori Shepherd Bioconductor Core Team Roswell Park Cancer Institute Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

[Bioc-devel] Single Package Builder Updates

2018-08-13 Thread Shepherd, Lori
We will be updating the Single Package Builder for new package submissions this morning. While the updates are occurring there will be a temporary downtime for submitting new packages and receiving the automatically generated build reports for existing submissions. We will announce when it is

Re: [Bioc-devel] Question

2018-08-13 Thread Shepherd, Lori
I think it depends on the journal and your order of priority. Essentially they are separate tasks but it is always nice when submitting to a journal to link to the accepted package on Bioconductor rather than a github repository. Keep in mind the review process for a package to be accepted to

[Bioc-devel] Question

2018-08-13 Thread Ghiwa Khalil
To whom it may concern, We are a bioinformatics team from the American University of Beirut, we are currently working on our package to submit to bioconductor. We have a question which we hope you can help us with. We plan on writing a paper regarding our package, is it recommended to wait to