Re: [Bioc-devel] Last build of Bioconductor 3.7

2018-10-15 Thread Turaga, Nitesh
Hello Developers,

Please note that the branch RELEASE_3_7 is now frozen. You cannot make any more 
changes as all the commits have been blocked.

Best,

Nitesh 


> On Oct 15, 2018, at 8:42 AM, Obenchain, Valerie 
>  wrote:
> 
> Developers,
> 
> Tonight is the last build of Bioconductor 3.7. After the report posts 
> tomorrow we'll stop the 3.7 builds and the branch will be frozen.
> 
> Any commits made today before 4:45pm EST will be included in the builds. 
> Please run `R CMD build` and `R CMD check` before committing!
> 
> Thanks.
> 
> Valerie
> 
> 
> This email message may contain legally privileged and/or confidential 
> information.  If you are not the intended recipient(s), or the employee or 
> agent responsible for the delivery of this message to the intended 
> recipient(s), you are hereby notified that any disclosure, copying, 
> distribution, or use of this email message is prohibited.  If you have 
> received this message in error, please notify the sender immediately by 
> e-mail and delete this email message from your computer. Thank you.
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> 
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Re: [Bioc-devel] Bioc 3.8 packages: if/while condition

2018-10-15 Thread Obenchain, Valerie
Sorry for the formatting mess. Trying again.

biovizBase,1.29.2
cbaf,1.3.5
CONFESS,1.9.0
DaMiRseq,1.5.2
fabia,2.27.0
flowViz,1.45.0
gaia,2.25.3
GateFinder,1.1.0
GenVisR,1.13.2
Guitar,1.19.0
hapFabia,1.23.0
KEGGlincs,1.7.3
Linnorm,2.5.0
MassArray,1.33.0
methylPipe,1.15.0
NOISeq,2.25.0
pathview,1.21.2
phyloseq,1.25.3
rHVDM,1.47.0
SEPA,1.11.0
seq2pathway,1.13.2
SPLINTER,1.7.2
SVAPLSseq,1.7.0
TFEA.ChIP,1.1.1
twilight,1.57.0






On 10/15/18 5:37 AM, Obenchain, Valerie wrote:

Developers,

The packages below execute an if() or while() statement on a condition with 
length greater than 1. This is currently a warning in R but will soon become an 
error.

Thanks to Tomas Kalibera for identifying packages that contain this error. If 
you maintain one of these please have a look at the output Tomas provides and 
check in a fix.

https://github.com/kalibera/rifcond/
https://github.com/kalibera/rifcond/tree/master/outputs_38

BIOC 3.8 packages:

biovizBase,1.29.2 cbaf,1.3.5 CONFESS,1.9.0 DaMiRseq,1.5.2 fabia,2.27.0 
flowViz,1.45.0 gaia,2.25.3 GateFinder,1.1.0 GenVisR,1.13.2 Guitar,1.19.0 
hapFabia,1.23.0 KEGGlincs,1.7.3 Linnorm,2.5.0 MassArray,1.33.0 
methylPipe,1.15.0 NOISeq,2.25.0 pathview,1.21.2 phyloseq,1.25.3 rHVDM,1.47.0 
SEPA,1.11.0 seq2pathway,1.13.2 SPLINTER,1.7.2 SVAPLSseq,1.7.0 TFEA.ChIP,1.1.1 
twilight,1.57.0 Thanks. Valerie



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[Bioc-devel] Last build of Bioconductor 3.7

2018-10-15 Thread Obenchain, Valerie
Developers,

Tonight is the last build of Bioconductor 3.7. After the report posts tomorrow 
we'll stop the 3.7 builds and the branch will be frozen.

Any commits made today before 4:45pm EST will be included in the builds. Please 
run `R CMD build` and `R CMD check` before committing!

Thanks.

Valerie


This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
this message in error, please notify the sender immediately by e-mail and 
delete this email message from your computer. Thank you.
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[Bioc-devel] Bioc 3.8 packages: if/while condition

2018-10-15 Thread Obenchain, Valerie
Developers,

The packages below execute an if() or while() statement on a condition with 
length greater than 1. This is currently a warning in R but will soon become an 
error.

Thanks to Tomas Kalibera for identifying packages that contain this error. If 
you maintain one of these please have a look at the output Tomas provides and 
check in a fix.

https://github.com/kalibera/rifcond/
https://github.com/kalibera/rifcond/tree/master/outputs_38

BIOC 3.8 packages:

biovizBase,1.29.2 cbaf,1.3.5 CONFESS,1.9.0 DaMiRseq,1.5.2 fabia,2.27.0 
flowViz,1.45.0 gaia,2.25.3 GateFinder,1.1.0 GenVisR,1.13.2 Guitar,1.19.0 
hapFabia,1.23.0 KEGGlincs,1.7.3 Linnorm,2.5.0 MassArray,1.33.0 
methylPipe,1.15.0 NOISeq,2.25.0 pathview,1.21.2 phyloseq,1.25.3 rHVDM,1.47.0 
SEPA,1.11.0 seq2pathway,1.13.2 SPLINTER,1.7.2 SVAPLSseq,1.7.0 TFEA.ChIP,1.1.1 
twilight,1.57.0 Thanks. Valerie


This email message may contain legally privileged and/or confidential 
information.  If you are not the intended recipient(s), or the employee or 
agent responsible for the delivery of this message to the intended 
recipient(s), you are hereby notified that any disclosure, copying, 
distribution, or use of this email message is prohibited.  If you have received 
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