Is the failure in your code or in the vignettes? I ran into a situation
where I was @importFrom-ing function and my devtools::check() was
failing because the @examples code wasn't seeing the imported
functions. This actually makes sense as a behavior because examples
should act like the
Hi Doug,
I think you've written a method of "[" for class "profileplyr" that is
using certain aspects of the Assays API that
are not guaranteed to be stable. It would be good to have a simple
reproducible example -- I can run
your vignette and see that certain uses of "$" cause errors but
Hi,
Our package - profileplyr - is failing on the development branch with an
error when it tries to subset a RangedSummarizedExperiment object with
brackets ([ ]). Within our package we build a slightly modified
RangedSummarizedExperiment object with a few additional slots and features,
and often
It should be possible to get stringdist as a binary package for mac.
provide your sessionInfo().
> BiocManager::install("stringdist")
*Bioconductor version 3.10 (BiocManager 1.30.4), R 3.6.0 Patched
(2019-05-06*
* r76460)*
*Installing package(s) 'stringdist'*
*trying URL
I have changed the S4methods now and the Rcheck is working fine locally on my
machine.
I cannot run BiocCheck because I cannot install it on my Mac anymore. It
depends on a package named stringdist, which cannot be installed in my Mac. I
get an error:
clang: error: unsupported option
Hi,
Dario is correct. Anything other than the current devel or RELEASE branch
cannot be modified.
Best,
Nitesh
On 7/12/19, 2:00 AM, "Bioc-devel on behalf of Dario Strbenac"
wrote:
Good day,
No; anything older than the release branch at present is not modifiable.
Good day,
No; anything older than the release branch at present is not modifiable.
--
Dario Strbenac
University of Sydney
Camperdown NSW 2050
Australia
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