[Bioc-devel] Changes to DataFrame

2019-08-27 Thread Pages, Herve
Hi developers, Short story: these changes shouldn't affect you but I recommend you read the long story just in case. Long story: Some of you maybe already noticed that I was making changes to the DataFrame class. The idea is to "make room" for other data-frame-like containers by having

Re: [Bioc-devel] Samtools dependency

2019-08-27 Thread Martin Morgan
I think you should proceed supposing that the build system will not install samtools, and that an R-based implementation is 'in the future'. As such, you should arrange in your examples / vignette to provide 'mock' output from samtools that you then process in your package -- kind of like the

Re: [Bioc-devel] Samtools dependency

2019-08-27 Thread Jonathon Hill
Hi, I just wanted to check in, as I know we got interrupted by the weekend. Any thoughts on the best way forward? Thanks, Jonathon > On Aug 23, 2019, at 5:00 PM, Jonathon Hill wrote: > > Yes, gladly. Thank you for taking time to help me. Here is the exact line of > R code where we build