Re: [Bioc-devel] check fails on arch 'i386'

2019-10-14 Thread Pages, Herve
Hi Toth, Not clear to me what's going on but I kind of suspect this might have something to do with the use of data.table. A few things to keep in mind: - 'R CMD check' runs all the example in the same R session. This means that the outcome of the examples of a given man page can be affected

[Bioc-devel] package has been cleaned for large data files and needs to be reset.

2019-10-14 Thread Jelena Chuklina
Dear Bioconductor team, We’ve cleaned the updated repository for large files and duplicates and would like to reset the upstream master branch as well as release branch. Could you please help with that? GitHub version of the package is: https://github.com/symbioticMe/proBatch Thank you in

Re: [Bioc-devel] Big repo problem & consequences: all commits duplicated

2019-10-14 Thread O'CALLAGHAN Alan
Hi Jelena, If you used BFG and then pull --allow-unrelated-histories, the large files are again present in the repo. Thanks to delta compression, the duplication of commits itself should not massively increase repository size, though it is not