Re: [Bioc-devel] Citation not updating

Hi David, Thanks for bringing this to our attention. We'll be looking into it. H. On 10/16/19 08:21, Robertson, David wrote: > Dear Bioc-devel, > > I updated the development version of the onlineFDR package almost a month > ago, but have noticed that the citation information displayed on the

Re: [Bioc-devel] plyranges group_by

Currently, the way grouping indices are generated is pretty slow if you’re doing stuff rowwise. Michael’s suggestion for using selfmatch should speed things up a bit. What are you planning to do after grouping? I’ve found there’s usually to do stuff without rowwise grouping but really depends

[Bioc-devel] Citation not updating

Dear Bioc-devel, I updated the development version of the onlineFDR package almost a month ago, but have noticed that the citation information displayed on the relevant Bioconductor webpage still has not updated: https://bioconductor.org/packages/devel/bioc/html/onlineFDR.html One change made

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

Hi Jelena, I was running some checks on your repository before I reset it. It looks like you cleaned the repository but the the repository you cleaned is not from our git.bioconductor.org. This is evident as the release commits that occur are missing from your current repo ``` git log --all

Re: [Bioc-devel] plyranges group_by

Just a note that in this particular case, selfmatch(annotatedsrf) would be a fast way to generate a grouping vector, like plyranges::group_by(annotatedsrf, selfmatch(annotatedsrf)). Michael On Wed, Oct 16, 2019 at 2:48 AM Bhagwat, Aditya < aditya.bhag...@mpi-bn.mpg.de> wrote: > Hi Stuart,

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

I am working on the reset now. I will email again when we think it is set. Sorry for the delay. Lori Shepherd Bioconductor Core Team Roswell Park Comprehensive Cancer Center Department of Biostatistics & Bioinformatics Elm & Carlton Streets Buffalo, New York 14263

Re: [Bioc-devel] package has been cleaned for large data files and needs to be reset.

Dear Bioconductor team, May I ask on the process of the package reset? How do I know the Bioconductor upstream of my project has been updated/failed? Thank you very much for your work. Best regards, Jelena Čuklina. On 14 Oct 2019, 18:49 +0200, Jelena Chuklina , wrote: Dear Bioconductor team,

[Bioc-devel] plyranges group_by

Hi Stuart, Michael, Your plyranges package is really cool - now I am using it for left joining GRanges (I am facing a minor issue there, but that is not the topic of this email - I have been asked by Lori not to double-post :-)). This email is about