[Bioc-devel] rtracklayer::import.bed(genome = Seqinfo)

Dear Michael, Sorry for my incomplete email - the send button got hit too fast. Better this time. rtracklayer::import.bed mentions the argument "genome" to be either a genome identifier (like 'mm10') or a Seqinfo object. I notice that the second option does not work on my BED file (in

[Bioc-devel] (no subject)

Dear Michael, # This works rtracklayer::import.bed('SRF.bed', genome = 'mm10') # this works # But this doesn't seqinfo1<- GenomeInfoDb::seqinfo(BSgenome.Mmusculus.UCSC.mm10::BSgenome.Mmusculus.UCSC.mm10) rtracklayer::import.bed('SRF.bed', genome = seqinfo1) # Neither does

[Bioc-devel] HDF5Array/DelayedArray matrix operations fail on windows

Hi, I am trying to make my package scMerge to be compatible with HDF5Array. While all the checks passed on Linux and Mac, it errored on Windows (http://bioconductor.org/checkResults/3.10/bioc-LATEST/scMerge/). Upon closer inspection, the failures seem to come a test for compatibility of