Thanks very much for the detailed explanation. That’s exactly what I did
before. Now I see the problem.
Best,
Ting
> On Oct 31, 2019, at 4:13 PM, Martin Morgan wrote:
>
> On the 3_9 branch I see
>
> commit c1382c3f7a0e3872cb66d077f9572b2b9618ecec (HEAD -> RELEASE_3_9,
> origin/RELEASE_3_9)
On the 3_9 branch I see
commit c1382c3f7a0e3872cb66d077f9572b2b9618ecec (HEAD -> RELEASE_3_9,
origin/RELEASE_3_9)
Author: Ting Huang
Date: Sat May 4 16:12:18 2019 -0400
Update version bump
commit 21273e6d818ed70fd258a9574700cc0f53ce0b8b
Author: Ting Huang
Date: Thu Aug 22 01:08:03
I meant to show the history of the RELEASE_3_10 branch sorry:
hpages@spectre:~/sandbox/MSstatsTMT$ git status
On branch RELEASE_3_10
Your branch is up-to-date with 'origin/RELEASE_3_10'.
nothing to commit, working directory clean
hpages@spectre:~/sandbox/MSstatsTMT$ git log
commit
If it were me I might update version
BiocManager::install(version="3.10")
...
Update xxx packages [y/n]: n
Confirm I've got the right version
BiocManager::version()
and then recover the URLs
BiocManager::repositories()
as arguments to install.packages(). It doesn't make sense to ask for
On Thu, Oct 31, 2019 at 11:52 AM James W. MacDonald wrote:
>
> The main goal for BiocManager is to help end users ensure that their R/BioC
> installation is consistent for the version of R that they are using. So by
> definition, any packages that are outside the versions for a given R/BioC
>
Hi Ting,
We don't roll back anything. We just take whatever is in
https://git.bioconductor.org/packages/MSstatsTMT and build that.
I don't see any commit from August in the RELEASE_3_10 branch there:
hpages@spectre:~/sandbox/MSstatsTMT$ git status
On branch master
Your branch is up-to-date with
Sorry, this should be included in the builds tonight for release tomorrow. I'll
update the release announcement when the package becomes available. Martin
On 10/31/19, 3:09 PM, "Bioc-devel on behalf of Oriol Senan Campos"
wrote:
Dear list members,
First of all congratulations
Dear Bioc-Team,
I’m the developer of package MSstatsTMT. Today I tried to install MSstatsTMT
from the new released Bioconductor 3.10. But it was found that the version of
MSstatsTMT is rolled back.
My last commit to MSstatsTMT is 2019 Aug 15 and the version in Bioconductor 3.9
is 1.2.7.
The main goal for BiocManager is to help end users ensure that their R/BioC
installation is consistent for the version of R that they are using. So by
definition, any packages that are outside the versions for a given R/BioC
installation should be up or down-graded to make the installation valid.
(posting this here since I think it's not a support question per se)
Hi, I just started an upgrade from Bioc 3.9 to 3.10 on my local R 3.6.1 setup:
> BiocManager::install(version = "3.10")
Upgrade 73 packages to Bioconductor version '3.10'? [y/n]: y
Bioconductor version 3.10 (BiocManager
Huge kudos to the team for another successful release.
Sean
On Wed, Oct 30, 2019 at 4:54 PM Shepherd, Lori <
lori.sheph...@roswellpark.org> wrote:
> Thanks to all developers and community members for contributing to the
> project!
>
> Please see the full release announcement:
>
>
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