Re: [Bioc-devel] From Biostring matching to short read mapping

2019-11-08 Thread Pages, Herve
Hi Aditya, Should not be too hard to parallelize. With some gotchas: using one worker per chromosome (which is the easy way to go) wouldn't be optimal because of the size differences between the chromosomes. So a better approach is to try to give each worker the same amount of work by

[Bioc-devel] Devel annotations

2019-11-08 Thread Shepherd, Lori
As part of our post release tasks we branch the annotation repository. The devel annotations will be unavailable for the next 1-2 hours. Please do not be alarmed if you see things like: cannot open the connection to 'https://bioconductor.org/packages/3.11/data/annotation/src/contrib/PACKAGES'