[Bioc-devel] Error from rmarkdown

2019-12-20 Thread r04945002
Hi all, I am the maintainer of anamiR. I keep getting this error on build report, which I don't get it on my local environment. Also, the weird part is that it did not show up until this September. Does anyone how to fix this? it looks like something went wrong with t.test from stats, and

Re: [Bioc-devel] Trigger a new build after version bump

2019-12-20 Thread Ahmed Metwally
I see! Thanks for letting me know, Martin. Best, From: Martin Morgan Sent: Friday, December 20, 2019 2:20 PM To: Ahmed Metwally ; Shepherd, Lori Cc: bioc-devel@r-project.org Subject: Re: [Bioc-devel] Trigger a new build after version bump I think this is

Re: [Bioc-devel] Trigger a new build after version bump

2019-12-20 Thread Martin Morgan
I think this is because of build failures of other packages on the Windows builder, as mentioned by Lori https://stat.ethz.ch/pipermail/bioc-devel/2019-December/015962.html For instance, your package can’t find SummarizedExperiment, because when the build system tried to install

Re: [Bioc-devel] Trigger a new build after version bump

2019-12-20 Thread Ahmed Metwally
Thank you, Martin! It worked exactly as you mentioned. Now the package has been built successfully, except for windows on the release branch. Here is the error: http://bioconductor.org/checkResults/release/bioc-LATEST/OmicsLonDA/tokay1-buildsrc.html * installing the package to build vignettes

[Bioc-devel] tokay1 reports

2019-12-20 Thread Shepherd, Lori
Hello all, We updated R on the release builders this week to be R 3.6.2. The windows update had some consequences on todays build report resulting in many false-positive ERRORS for tokay1. Please ignore the tokay1 result from today (Fri Dec 20th) we expect these to clear up on tomorrows

Re: [Bioc-devel] How to move package from workflow to software

2019-12-20 Thread Turaga, Nitesh
For context to the bioc-devel mailing list. https://gist.github.com/nturaga/189b71ca4e6247747b72d4163a7b2bf1 Hi Julien, We'll skip the SPB and just review your package and have it converted from workflow to software. Thanks for making the changes. I'll get back to you with a secondary

Re: [Bioc-devel] bioctitle issue for Rmd

2019-12-20 Thread Sergio Picart Armada
Hi all,  Also experiencing this.  http://bioconductor.org/checkResults/release/bioc-LATEST/FELLA/tokay1-buildsrc.html Hope it gets fixed soon, S On Wednesday, December 18, 2019 11:30 CET, "Pages, Herve" wrote:  Hi Vince, I opened an issue on GitHub for this: