Thanks Nitesh.
I ported the fix and the package builds fine - besides the deprecation warning:
http://bioconductor.org/checkResults/devel/bioc-LATEST/PathNet
Best,
Ludwig
From: Turaga, Nitesh
Sent: Thursday, December 19, 2019 2:12 PM
To: Shepherd, Lori
Dear Herve & co,
Wish you a happy new year :-).
I am optimizing code that calls BSgenome::vcountPDict.
BSgenome::vcountPDict calls bsapply, which calls sapply.
Could this sapply be replaced by a bplapply instead - that would turn all the
vcount, vmatch, etc operations into parallellized
